Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Cotton_A_13654
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 698
Length: 1164
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30
Found at i:348 original size:150 final size:150
Alignment explanation
Indices: 77--378 Score: 586
Period size: 150 Copynumber: 2.0 Consensus size: 150
67 TCAAAAGCAG
*
77 ATTCTGTGTATTGCAGTAATCCAAGAAGCCGATGCTATGGAAAGTACATAGAATGTCCTTATGAA
1 ATTCTGTGTATTGCAGTAATCCAAGAAGCCGATGCTATGGAAAATACATAGAATGTCCTTATGAA
142 TGTCCAAGCACTAGCAACGGCAATTACAAAGCTAAAGTCTGTCATGTTAACTGTGATTCACCCGT
66 TGTCCAAGCACTAGCAACGGCAATTACAAAGCTAAAGTCTGTCATGTTAACTGTGATTCACCCGT
207 CTGCAAATCTTATTGTAAAC
131 CTGCAAATCTTATTGTAAAC
227 ATTCTGTGTATTGCAGTAATCCAAGAAGCCGATGCTATGGAAAATACATAGAATGTCCTTATGAA
1 ATTCTGTGTATTGCAGTAATCCAAGAAGCCGATGCTATGGAAAATACATAGAATGTCCTTATGAA
*
292 TGTCCAAGCACTAGCTACGGCAATTACAAAGCTAAAGTCTGTCATGTTAACTGTGATTCACCCGT
66 TGTCCAAGCACTAGCAACGGCAATTACAAAGCTAAAGTCTGTCATGTTAACTGTGATTCACCCGT
357 CTGCAAATCTTATTGTAAAC
131 CTGCAAATCTTATTGTAAAC
377 AT
1 AT
379 CGTAAACCAG
Statistics
Matches: 150, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 150 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (150 bp):
ATTCTGTGTATTGCAGTAATCCAAGAAGCCGATGCTATGGAAAATACATAGAATGTCCTTATGAA
TGTCCAAGCACTAGCAACGGCAATTACAAAGCTAAAGTCTGTCATGTTAACTGTGATTCACCCGT
CTGCAAATCTTATTGTAAAC
Done.