Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04069

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 840

Length: 1401
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32


Found at i:1007 original size:12 final size:12

Alignment explanation


    Indices: 990--1024  Score: 52
    Period size: 12  Copynumber: 2.9  Consensus size: 12

        980 TGGATTTGGA

                        
        990 CGACAGTGACAG
          1 CGACAGTGACAG

                  *     
       1002 CGACAGCGACAG
          1 CGACAGTGACAG

                 *     
       1014 CGACAATGACA
          1 CGACAGTGACA

       1025 ATGACGACGG


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.37, C:0.29, G:0.29, T:0.06


Consensus pattern (12 bp):   
CGACAGTGACAG
Done.