Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_13564

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 282

Length: 471
ACGTcount: A:0.29, C:0.25, G:0.25, T:0.21


Found at i:217 original size:36 final size:36

Alignment explanation


    Indices: 159--245  Score: 93
    Period size: 36  Copynumber: 2.4  Consensus size: 36

        149 GGGGACACCC

                     *  *           * *   * *   
        159 AGGATATCCACCACATGGAGGACATCTTCCTCCCGG
          1 AGGATATCCCCCTCATGGAGGACACCATCCACACGG

               *             *               *  
        195 AGGGTATCCCCCTCATGTAGGACACCATCCACATGG
          1 AGGATATCCCCCTCATGGAGGACACCATCCACACGG

                           
        231 AGGATATCCCCCTCA
          1 AGGATATCCCCCTCA

        246 GGGTTATCCT


Statistics
Matches: 41,  Mismatches: 10, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  36   41  1.00

ACGTcount: A:0.25, C:0.34, G:0.21, T:0.20


Consensus pattern (36 bp):   
AGGATATCCCCCTCATGGAGGACACCATCCACACGG
Done.