Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_32981

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2865
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23


Found at i:1250 original size:15 final size:15

Alignment explanation


    Indices: 1222--1258  Score: 56
    Period size: 15  Copynumber: 2.5  Consensus size: 15

       1212 TACTAGTGCC

                 *   *     
       1222 CCACCCCCTTCAAGA
          1 CCACCACCTCCAAGA

                           
       1237 CCACCACCTCCAAGA
          1 CCACCACCTCCAAGA

                   
       1252 CCACCAC
          1 CCACCAC

       1259 GAGTTTCAAA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.30, C:0.57, G:0.05, T:0.08


Consensus pattern (15 bp):   
CCACCACCTCCAAGA
Done.