Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09360

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 660

Length: 1101
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.23


Found at i:928 original size:15 final size:15

Alignment explanation


    Indices: 910--959  Score: 57
    Period size: 15  Copynumber: 3.3  Consensus size: 15

        900 GCTTGAGTTG

                           
        910 GATGATGAGGATGAA
          1 GATGATGAGGATGAA

                  *  *      
        925 GATGA-AATTGATGAA
          1 GATGATGA-GGATGAA

                          *
        940 GATGATGAGGATGAC
          1 GATGATGAGGATGAA

                 
        955 GATGA
          1 GATGA

        960 AGATGAGGAG


Statistics
Matches: 28,  Mismatches: 5, Indels: 4
        0.76            0.14        0.11

Matches are distributed among these distances:
  14    1  0.04
  15   26  0.93
  16    1  0.04

ACGTcount: A:0.40, C:0.02, G:0.36, T:0.22


Consensus pattern (15 bp):   
GATGATGAGGATGAA
Done.