Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19288

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 279
ACGTcount: A:0.20, C:0.18, G:0.36, T:0.27


Found at i:162 original size:21 final size:21

Alignment explanation


    Indices: 101--162  Score: 58
    Period size: 20  Copynumber: 3.0  Consensus size: 21

         91 CTCTTTGCGT

                                 *
        101 GTACGGAGTGCGT-GGCGT-GT
          1 GTACGGAG-GCGTGGGCGTGGC

                  *       *       
        121 GTACGGGGGCCGTGTGC-TGGC
          1 GTACGGAGG-CGTGGGCGTGGC

                                 
        142 GTACGGAGGCGTGGGCGTGGC
          1 GTACGGAGGCGTGGGCGTGGC

        163 TGTGGCGCCA


Statistics
Matches: 33,  Mismatches: 5, Indels: 7
        0.73            0.11        0.16

Matches are distributed among these distances:
  19    1  0.03
  20   17  0.52
  21   15  0.45

ACGTcount: A:0.08, C:0.19, G:0.53, T:0.19


Consensus pattern (21 bp):   
GTACGGAGGCGTGGGCGTGGC
Done.