Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_21512

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2469
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.30


Found at i:2394 original size:21 final size:21

Alignment explanation


    Indices: 2368--2414  Score: 78
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       2358 TAGTATGGTA

                                  
       2368 GAAGAATCTGAAAATTCTTG-G
          1 GAAGAATCTGAAAATTC-TGAG

                                 
       2389 GAAGAATCTGAAAATTCTGAG
          1 GAAGAATCTGAAAATTCTGAG

                 
       2410 GAAGA
          1 GAAGA

       2415 TCTAAGCGAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
  20    2  0.08
  21   23  0.92

ACGTcount: A:0.43, C:0.09, G:0.26, T:0.23


Consensus pattern (21 bp):   
GAAGAATCTGAAAATTCTGAG
Done.