Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06936

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 586

Length: 978
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25


Found at i:139 original size:18 final size:16

Alignment explanation


    Indices: 94--140  Score: 58
    Period size: 16  Copynumber: 2.8  Consensus size: 16

         84 CATTGTTATT

                     *      
         94 GCTCTCTTTGTTCTTC
          1 GCTCTCTTTATTCTTC

             *              
        110 GTTCTCTTTATTCTTC
          1 GCTCTCTTTATTCTTC

                           
        126 GCTCTACATTTATTC
          1 GCTCT-C-TTTATTC

        141 AAATAAAGAT


Statistics
Matches: 26,  Mismatches: 3, Indels: 2
        0.84            0.10        0.06

Matches are distributed among these distances:
  16   18  0.69
  17    1  0.04
  18    7  0.27

ACGTcount: A:0.09, C:0.28, G:0.09, T:0.55


Consensus pattern (16 bp):   
GCTCTCTTTATTCTTC
Done.