Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_28664

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2820
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28


Found at i:2741 original size:15 final size:15

Alignment explanation


    Indices: 2721--2750  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       2711 ATGGATCAAA

                           
       2721 TAGCACTAGCTACTC
          1 TAGCACTAGCTACTC

                           
       2736 TAGCACTAGCTACTC
          1 TAGCACTAGCTACTC

       2751 CATCAGAAGA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.27, C:0.33, G:0.13, T:0.27


Consensus pattern (15 bp):   
TAGCACTAGCTACTC
Done.