Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_34494

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5502
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29


Found at i:5191 original size:30 final size:30

Alignment explanation


    Indices: 5155--5216  Score: 90
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       5145 TGCGACAGGA

                           *               
       5155 GGTGGGTTTGCT-GGTTTGGCTTCAGGTGGT
          1 GGTGGGTTTGCTGGGGTT-GCTTCAGGTGGT

                     *                    
       5185 GGTGGGTTTTCTGGGGTTGCTTCAGGTGGT
          1 GGTGGGTTTGCTGGGGTTGCTTCAGGTGGT

              
       5215 GG
          1 GG

       5217 ATTTGGTGTT


Statistics
Matches: 29,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  30   25  0.86
  31    4  0.14

ACGTcount: A:0.03, C:0.10, G:0.48, T:0.39


Consensus pattern (30 bp):   
GGTGGGTTTGCTGGGGTTGCTTCAGGTGGT
Done.