Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_11840

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 745

Length: 1242
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.24


Found at i:299 original size:6 final size:6

Alignment explanation


    Indices: 244--296  Score: 97
    Period size: 6  Copynumber: 8.8  Consensus size: 6

        234 AGGCATGGAC

                                                                  *
        244 GATGAA GATGAA GATGAA GATGAA GATGAA GATGAA GATGAA GATGAT
          1 GATGAA GATGAA GATGAA GATGAA GATGAA GATGAA GATGAA GATGAA

                 
        292 GATGA
          1 GATGA

        297 TGACGAGGAG


Statistics
Matches: 46,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   6   46  1.00

ACGTcount: A:0.47, C:0.00, G:0.34, T:0.19


Consensus pattern (6 bp):   
GATGAA
Done.