Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20643

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 756

Length: 1260
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.24


Found at i:336 original size:23 final size:22

Alignment explanation


    Indices: 306--353  Score: 53
    Period size: 22  Copynumber: 2.1  Consensus size: 22

        296 AAGGTATGGT

                    *              
        306 TCAGGATATTGGAACTGAAG-TC
          1 TCAGGATAAT-GAACTGAAGCTC

                            *      
        328 TCAGAGATAATGAACTTAAGCTC
          1 TCAG-GATAATGAACTGAAGCTC

               
        351 TCA
          1 TCA

        354 AATGGCAGCC


Statistics
Matches: 22,  Mismatches: 2, Indels: 3
        0.81            0.07        0.11

Matches are distributed among these distances:
  22   12  0.55
  23   10  0.45

ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27


Consensus pattern (22 bp):   
TCAGGATAATGAACTGAAGCTC
Done.