Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_36133

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3798
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.30


Found at i:2734 original size:21 final size:21

Alignment explanation


    Indices: 2693--2735  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2683 GGTGATGCTA

                          * *    
       2693 CAAAAGATAGTTCTGCGGCTG
          1 CAAAAGATAGTTCTCCAGCTG

                    *            
       2714 CAAAAGATTGTTCTCCAGCTG
          1 CAAAAGATAGTTCTCCAGCTG

             
       2735 C
          1 C

       2736 TGATAAACAC


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26


Consensus pattern (21 bp):   
CAAAAGATAGTTCTCCAGCTG
Done.