Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_01675

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 448

Length: 747
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28


Found at i:331 original size:15 final size:15

Alignment explanation


    Indices: 311--340  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        301 CCTAGTGCCG

                      *    
        311 CCGCCACCACCACCA
          1 CCGCCACCACAACCA

                           
        326 CCGCCACCACAACCA
          1 CCGCCACCACAACCA

        341 GTTATAATAG


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.30, C:0.63, G:0.07, T:0.00


Consensus pattern (15 bp):   
CCGCCACCACAACCA
Done.