Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03118

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2388
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.32


Found at i:1530 original size:6 final size:6

Alignment explanation


    Indices: 1516--1553  Score: 67
    Period size: 6  Copynumber: 6.3  Consensus size: 6

       1506 AAATCCTCCT

                       *                                
       1516 GCCAAA GCCACA GCCAAA GCCAAA GCCAAA GCCAAA GC
          1 GCCAAA GCCAAA GCCAAA GCCAAA GCCAAA GCCAAA GC

       1554 TGAGAAGAAG


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   6   30  1.00

ACGTcount: A:0.45, C:0.37, G:0.18, T:0.00


Consensus pattern (6 bp):   
GCCAAA

Done.