Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09827

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 252
ACGTcount: A:0.21, C:0.27, G:0.34, T:0.17


Found at i:124 original size:25 final size:25

Alignment explanation


    Indices: 96--144  Score: 98
    Period size: 25  Copynumber: 2.0  Consensus size: 25

         86 AGGCTCTTGC

                                     
         96 TCCGAAAGGGGAGGGACCGGGATGG
          1 TCCGAAAGGGGAGGGACCGGGATGG

                                    
        121 TCCGAAAGGGGAGGGACCGGGATG
          1 TCCGAAAGGGGAGGGACCGGGATG

        145 ACTTGTAGCA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.24, C:0.16, G:0.51, T:0.08


Consensus pattern (25 bp):   
TCCGAAAGGGGAGGGACCGGGATGG
Done.