Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18425

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 671

Length: 1119
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25


Found at i:319 original size:45 final size:45

Alignment explanation


    Indices: 268--353  Score: 145
    Period size: 45  Copynumber: 1.9  Consensus size: 45

        258 CGAAGCTTTG

                   *                                     
        268 GGTACCCTAAATCCGAATCCCATTGACGCGGTCACAATTTCTGAA
          1 GGTACCCCAAATCCGAATCCCATTGACGCGGTCACAATTTCTGAA

                                        * *          
        313 GGTACCCCAAATCCGAATCCCATTGACGTGTTCACAATTTC
          1 GGTACCCCAAATCCGAATCCCATTGACGCGGTCACAATTTC

        354 AGATGATGAA


Statistics
Matches: 38,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  45   38  1.00

ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26


Consensus pattern (45 bp):   
GGTACCCCAAATCCGAATCCCATTGACGCGGTCACAATTTCTGAA
Done.