Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02391

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3597
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25


Found at i:957 original size:18 final size:18

Alignment explanation


    Indices: 904--971  Score: 55
    Period size: 18  Copynumber: 3.8  Consensus size: 18

        894 TCGTGACCAT

                       *  *  *
        904 GATAGAGAGCGTGATCGT
          1 GATAGAGAGCGGGAGCGC

              *     *  *      
        922 GACAGAGACCGTGAGCGC
          1 GATAGAGAGCGGGAGCGC

            *    *            
        940 TATAGGGAGCGGGAGCGC
          1 GATAGAGAGCGGGAGCGC

               *          
        958 GATCGAGAGCGGGA
          1 GATAGAGAGCGGGA

        972 TATTGGACGC


Statistics
Matches: 38,  Mismatches: 12, Indels: 0
        0.76            0.24        0.00

Matches are distributed among these distances:
  18   38  1.00

ACGTcount: A:0.26, C:0.18, G:0.44, T:0.12


Consensus pattern (18 bp):   
GATAGAGAGCGGGAGCGC
Done.