Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_00739

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 271

Length: 453
ACGTcount: A:0.22, C:0.18, G:0.37, T:0.23


Found at i:370 original size:15 final size:15

Alignment explanation


    Indices: 352--383  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        342 TCGGCGTGAA

                    *      
        352 GGTGGATATGGAGGT
          1 GGTGGATACGGAGGT

                           
        367 GGTGGATACGGAGGT
          1 GGTGGATACGGAGGT

              
        382 GG
          1 GG

        384 ACGCCGTGAT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.19, C:0.03, G:0.56, T:0.22


Consensus pattern (15 bp):   
GGTGGATACGGAGGT
Done.