Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18358

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 384

Length: 641
ACGTcount: A:0.25, C:0.24, G:0.34, T:0.17


Found at i:597 original size:81 final size:81

Alignment explanation


    Indices: 462--613  Score: 295
    Period size: 81  Copynumber: 1.9  Consensus size: 81

        452 ACTCAGAACT

                                     *                                       
        462 GCCAAGGGAACGGGCTTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCC
          1 GCCAAGGGAACGGGCTTGGCAGAATAAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCC

                            
        527 GACTTTCGAAACCACA
         66 GACTTTCGAAACCACA

                                                                             
        543 GCCAAGGGAACGGGCTTGGCAGAATAAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCC
          1 GCCAAGGGAACGGGCTTGGCAGAATAAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCC

                  
        608 GACTTT
         66 GACTTT

        614 GTGAAATGAC


Statistics
Matches: 70,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  81   70  1.00

ACGTcount: A:0.28, C:0.23, G:0.31, T:0.18


Consensus pattern (81 bp):   
GCCAAGGGAACGGGCTTGGCAGAATAAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCC
GACTTTCGAAACCACA
Done.