Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_37022

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 682

Length: 1137
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25


Found at i:31 original size:9 final size:9

Alignment explanation


    Indices: 17--50  Score: 68
    Period size: 9  Copynumber: 3.8  Consensus size: 9

          7 ACACCCATTC

                     
         17 TAGAAAAGT
          1 TAGAAAAGT

                     
         26 TAGAAAAGT
          1 TAGAAAAGT

                     
         35 TAGAAAAGT
          1 TAGAAAAGT

                   
         44 TAGAAAA
          1 TAGAAAA

         51 CAAGGCTGGA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   25  1.00

ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21


Consensus pattern (9 bp):   
TAGAAAAGT
Done.