Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09911

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 716

Length: 1194
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27


Found at i:741 original size:18 final size:18

Alignment explanation


    Indices: 707--741  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        697 GCAAAAGAGT

                        *     
        707 CAAGAGCAAAGGCAAGGG
          1 CAAGAGCAAAGGAAAGGG

                     *       
        725 CAAGAGCAAGGGAAAGG
          1 CAAGAGCAAAGGAAAGG

        742 ACTCGAGAAA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.46, C:0.14, G:0.40, T:0.00


Consensus pattern (18 bp):   
CAAGAGCAAAGGAAAGGG
Done.