Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_32288

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 516

Length: 861
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27


Found at i:316 original size:3 final size:3

Alignment explanation


    Indices: 298--332  Score: 52
    Period size: 3  Copynumber: 11.7  Consensus size: 3

        288 ATTATCAAGC

                  *     *                                 
        298 TCT TCA TCT CCT TCT TCT TCT TCT TCT TCT TCT TC
          1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC

        333 AGCTTCAGCC


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   3   28  1.00

ACGTcount: A:0.03, C:0.37, G:0.00, T:0.60


Consensus pattern (3 bp):   
TCT

Done.