Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14024

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 342

Length: 570
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26


Found at i:335 original size:21 final size:21

Alignment explanation


    Indices: 311--350  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        301 TCTCCATCTC

                *       *        
        311 CACCTCCACCACGGCCACCCT
          1 CACCCCCACCACCGCCACCCT

                      *        
        332 CACCCCCACCCCCGCCACC
          1 CACCCCCACCACCGCCACC

        351 ACCAGCACCT


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   16  1.00

ACGTcount: A:0.17, C:0.70, G:0.07, T:0.05


Consensus pattern (21 bp):   
CACCCCCACCACCGCCACCCT
Done.