Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08348

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27


Found at i:864 original size:16 final size:17

Alignment explanation


    Indices: 843--875  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        833 GTGAGACTTA

                        *    
        843 CAAT-GGAGAAACCAAG
          1 CAATGGGAGAAAACAAG

                             
        859 CAATGGGAGAAAACAAG
          1 CAATGGGAGAAAACAAG

        876 AGGGGAAACA


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  16    4  0.27
  17   11  0.73

ACGTcount: A:0.52, C:0.15, G:0.27, T:0.06


Consensus pattern (17 bp):   
CAATGGGAGAAAACAAG
Done.