Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19464

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 331

Length: 552
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29


Found at i:254 original size:30 final size:30

Alignment explanation


    Indices: 195--257  Score: 81
    Period size: 30  Copynumber: 2.1  Consensus size: 30

        185 TCAAGTCTGC

                *           *    * **     
        195 AGAAGAAGAAGAAACAGCTGTTGTTGAACA
          1 AGAACAAGAAGAAACAACTGTCGCCGAACA

                                          
        225 AGAACAAGAAGAAACAACTGTCGCCGAACA
          1 AGAACAAGAAGAAACAACTGTCGCCGAACA

               
        255 AGA
          1 AGA

        258 GTCTGTTTCT


Statistics
Matches: 28,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  30   28  1.00

ACGTcount: A:0.49, C:0.16, G:0.24, T:0.11


Consensus pattern (30 bp):   
AGAACAAGAAGAAACAACTGTCGCCGAACA
Done.