Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_24016

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 865

Length: 1443
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24


Found at i:1124 original size:24 final size:24

Alignment explanation


    Indices: 1096--1142  Score: 85
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1086 CATTGGAAAT

                           *        
       1096 GATGATAAGAAGAATGTACAGGAA
          1 GATGATAAGAAGAATATACAGGAA

                                   
       1120 GATGATAAGAAGAATATACAGGA
          1 GATGATAAGAAGAATATACAGGA

       1143 TGAGTATCTT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   22  1.00

ACGTcount: A:0.51, C:0.04, G:0.28, T:0.17


Consensus pattern (24 bp):   
GATGATAAGAAGAATATACAGGAA

Done.