Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17710

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3579
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30


Found at i:1648 original size:13 final size:14

Alignment explanation


    Indices: 1620--1648  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       1610 TCTTGGTGAC

                          
       1620 ATTGGTTAATTCAT
          1 ATTGGTTAATTCAT

                          
       1634 ATTGGTTAA-TCAT
          1 ATTGGTTAATTCAT

              
       1647 AT
          1 AT

       1649 CAAGTCTTTA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    6  0.40
  14    9  0.60

ACGTcount: A:0.31, C:0.07, G:0.14, T:0.48


Consensus pattern (14 bp):   
ATTGGTTAATTCAT
Done.