Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17654

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2250
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23


Found at i:810 original size:51 final size:51

Alignment explanation


    Indices: 755--855  Score: 193
    Period size: 51  Copynumber: 2.0  Consensus size: 51

        745 GATGAAGAAA

                         *                                     
        755 AAGAAAAGAAAGAGGCAAAGGGTGATGATGGATCTTTAGTGATTAATTCAG
          1 AAGAAAAGAAAGAAGCAAAGGGTGATGATGGATCTTTAGTGATTAATTCAG

                                                              
        806 AAGAAAAGAAAGAAGCAAAGGGTGATGATGGATCTTTAGTGATTAATTCA
          1 AAGAAAAGAAAGAAGCAAAGGGTGATGATGGATCTTTAGTGATTAATTCA

        856 TCCATTGTTG


Statistics
Matches: 49,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  51   49  1.00

ACGTcount: A:0.43, C:0.06, G:0.28, T:0.24


Consensus pattern (51 bp):   
AAGAAAAGAAAGAAGCAAAGGGTGATGATGGATCTTTAGTGATTAATTCAG
Done.