Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09669

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2730
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26


Found at i:1025 original size:30 final size:30

Alignment explanation


    Indices: 929--1015  Score: 138
    Period size: 30  Copynumber: 2.9  Consensus size: 30

        919 ATCGACCGCA

                *                         
        929 GGGAGAAACCAAGGAAAAGCACCGATACCC
          1 GGGAAAAACCAAGGAAAAGCACCGATACCC

                *  *                      
        959 GGGACAAGCCAAGGAAAAGCACCGATACCC
          1 GGGAAAAACCAAGGAAAAGCACCGATACCC

                                 *     
        989 GGGAAAAACCAAGGAAAAGCATCGATA
          1 GGGAAAAACCAAGGAAAAGCACCGATA

       1016 GGCCTGAAAA


Statistics
Matches: 52,  Mismatches: 5, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  30   52  1.00

ACGTcount: A:0.45, C:0.24, G:0.26, T:0.05


Consensus pattern (30 bp):   
GGGAAAAACCAAGGAAAAGCACCGATACCC
Done.