Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30634

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 273

Length: 456
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28


Found at i:273 original size:6 final size:6

Alignment explanation


    Indices: 243--283  Score: 55
    Period size: 6  Copynumber: 6.8  Consensus size: 6

        233 GGGAAAACAA

                     *         *   *                       
        243 GCATAG GCCTAG GCATAA GCGTAG GCATAG GCATAG GCATA
          1 GCATAG GCATAG GCATAG GCATAG GCATAG GCATAG GCATA

        284 AGGAGATGAC


Statistics
Matches: 29,  Mismatches: 6, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
   6   29  1.00

ACGTcount: A:0.32, C:0.20, G:0.32, T:0.17


Consensus pattern (6 bp):   
GCATAG
Done.