Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_24512

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 571

Length: 953
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24


Found at i:616 original size:72 final size:72

Alignment explanation


    Indices: 476--616  Score: 210
    Period size: 72  Copynumber: 2.0  Consensus size: 72

        466 AGTCCGAGCG

                             *                                     *       * 
        476 ATCGCATTCACATTCGATTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACTATTTCCCGG
          1 ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACAATTTCCCAG

                   
        541 GCTCGTC
         66 GCTCGTC

                       *    *                         *  *               *   
        548 ATCGCATTCACTTTCGGCTGATACTTCTTATCATCCGGATTTTGCGGGCAATGACAATTTCTCAG
          1 ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACAATTTCCCAG

                
        613 GCTC
         66 GCTC

        617 ATCGGGGGGC


Statistics
Matches: 61,  Mismatches: 8, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  72   61  1.00

ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34


Consensus pattern (72 bp):   
ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACAATTTCCCAG
GCTCGTC
Done.