Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06409

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 894

Length: 1491
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.21


Found at i:781 original size:42 final size:42

Alignment explanation


    Indices: 722--803  Score: 155
    Period size: 42  Copynumber: 2.0  Consensus size: 42

        712 CAAAGACAGA

                      *                               
        722 TACAAGAATTGCAGAGGCTTCAAATTCGGGATCAAGAACATC
          1 TACAAGAATTACAGAGGCTTCAAATTCGGGATCAAGAACATC

                                                    
        764 TACAAGAATTACAGAGGCTTCAAATTCGGGATCAAGAACA
          1 TACAAGAATTACAGAGGCTTCAAATTCGGGATCAAGAACA

        804 GCTCGCTATG


Statistics
Matches: 39,  Mismatches: 1, Indels: 0
        0.98            0.03        0.00

Matches are distributed among these distances:
  42   39  1.00

ACGTcount: A:0.40, C:0.18, G:0.21, T:0.21


Consensus pattern (42 bp):   
TACAAGAATTACAGAGGCTTCAAATTCGGGATCAAGAACATC
Done.