Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17660

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 961

Length: 1602
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24


Found at i:981 original size:23 final size:21

Alignment explanation


    Indices: 932--983  Score: 79
    Period size: 21  Copynumber: 2.5  Consensus size: 21

        922 TTCGATGCTT

                       *         
        932 CTGAGAGATCCGAGGAATTGC
          1 CTGAGAGATCCAAGGAATTGC

                                 
        953 CTGAGAGATCCAAGGAATTGC
          1 CTGAGAGATCCAAGGAATTGC

                       
        974 CT-AGGAGATC
          1 CTGA-GAGATC

        984 AAAGAGGCCA


Statistics
Matches: 29,  Mismatches: 1, Indels: 2
        0.91            0.03        0.06

Matches are distributed among these distances:
  20    1  0.03
  21   28  0.97

ACGTcount: A:0.31, C:0.19, G:0.31, T:0.19


Consensus pattern (21 bp):   
CTGAGAGATCCAAGGAATTGC
Done.