Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_11419

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 444

Length: 741
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26


Found at i:352 original size:24 final size:24

Alignment explanation


    Indices: 298--371  Score: 76
    Period size: 24  Copynumber: 3.1  Consensus size: 24

        288 AGACGAAGCT

                  *     *          *
        298 GAGGGTAGAGATAAAGATGAAAAT
          1 GAGGGTGGAGATGAAGATGAAAAC

              *                 **  
        322 GATGGTGGAGATGAAGATGAGTAC
          1 GAGGGTGGAGATGAAGATGAAAAC

                   *             *  
        346 GAGGGTGAAGATGAAGATGAAGAC
          1 GAGGGTGGAGATGAAGATGAAAAC

              
        370 GA
          1 GA

        372 AGAAGATGAG


Statistics
Matches: 40,  Mismatches: 10, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
  24   40  1.00

ACGTcount: A:0.42, C:0.03, G:0.39, T:0.16


Consensus pattern (24 bp):   
GAGGGTGGAGATGAAGATGAAAAC
Done.