Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29872

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 576

Length: 960
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23


Found at i:874 original size:3 final size:3

Alignment explanation


    Indices: 868--892  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

        858 TCATCAAACC

                                             
        868 CAG CAG CAG CAG CAG CAG CAG CAG C
          1 CAG CAG CAG CAG CAG CAG CAG CAG C

        893 TTCAAGTTCG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.32, C:0.36, G:0.32, T:0.00


Consensus pattern (3 bp):   
CAG

Done.