Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_25444

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 432

Length: 720
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.22


Found at i:705 original size:15 final size:16

Alignment explanation


    Indices: 679--708  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

        669 TCTTAAGCAT

                            
        679 CTCAGTGAAGATGACA
          1 CTCAGTGAAGATGACA

                           
        695 CTCAG-GAAGATGAC
          1 CTCAGTGAAGATGAC

        709 GATACCTCGT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    9  0.64
  16    5  0.36

ACGTcount: A:0.37, C:0.20, G:0.27, T:0.17


Consensus pattern (16 bp):   
CTCAGTGAAGATGACA
Done.