Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07589

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2940
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26


Found at i:683 original size:15 final size:16

Alignment explanation


    Indices: 663--704  Score: 52
    Period size: 15  Copynumber: 2.8  Consensus size: 16

        653 AAGAAACTGA

                            
        663 TAAACATGAAATCCA-
          1 TAAACATGAAATCCAG

             *    *         
        678 TGAACACGAAA-CCAG
          1 TAAACATGAAATCCAG

                        
        693 TAAACATGAAAT
          1 TAAACATGAAAT

        705 TGATAAACAA


Statistics
Matches: 21,  Mismatches: 4, Indels: 3
        0.75            0.14        0.11

Matches are distributed among these distances:
  14    3  0.14
  15   18  0.86

ACGTcount: A:0.52, C:0.19, G:0.12, T:0.17


Consensus pattern (16 bp):   
TAAACATGAAATCCAG
Done.