Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09358

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2947
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.26


Found at i:938 original size:30 final size:30

Alignment explanation


    Indices: 902--962  Score: 95
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        892 GATATACTCT

                                          
        902 TAGATGATGCAGTAGTATCAGAAAAAAAGG
          1 TAGATGATGCAGTAGTATCAGAAAAAAAGG

                      *  *       *        
        932 TAGATGATGCTGTGGTATCAGGAAAAAAGG
          1 TAGATGATGCAGTAGTATCAGAAAAAAAGG

             
        962 T
          1 T

        963 GGAAGAGACG


Statistics
Matches: 28,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  30   28  1.00

ACGTcount: A:0.41, C:0.07, G:0.30, T:0.23


Consensus pattern (30 bp):   
TAGATGATGCAGTAGTATCAGAAAAAAAGG
Done.