Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17685

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3939
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28


Found at i:1124 original size:30 final size:30

Alignment explanation


    Indices: 1088--1151  Score: 101
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       1078 TCTTTGACAG

                                * *       
       1088 CTCATGCACCTTCATCAACAGTCCAATCTT
          1 CTCATGCACCTTCATCAACACTACAATCTT

                               *          
       1118 CTCATGCACCTTCATCAACCCTACAATCTT
          1 CTCATGCACCTTCATCAACACTACAATCTT

                
       1148 CTCA
          1 CTCA

       1152 ACCTGTTTTG


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  30   31  1.00

ACGTcount: A:0.27, C:0.39, G:0.05, T:0.30


Consensus pattern (30 bp):   
CTCATGCACCTTCATCAACACTACAATCTT
Done.