Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29240

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 475

Length: 792
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26


Found at i:319 original size:3 final size:3

Alignment explanation


    Indices: 313--337  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

        303 TAATGGAGAA

                                             
        313 GCT GCT GCT GCT GCT GCT GCT GCT G
          1 GCT GCT GCT GCT GCT GCT GCT GCT G

        338 TGACTATTCA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.00, C:0.32, G:0.36, T:0.32


Consensus pattern (3 bp):   
GCT

Done.