Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_00136

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 702

Length: 1170
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25


Found at i:289 original size:9 final size:9

Alignment explanation


    Indices: 275--300  Score: 52
    Period size: 9  Copynumber: 2.9  Consensus size: 9

        265 AGCCCGCAAC

                     
        275 ATCCACAAT
          1 ATCCACAAT

                     
        284 ATCCACAAT
          1 ATCCACAAT

                    
        293 ATCCACAA
          1 ATCCACAA

        301 CCGCGACCAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.46, C:0.35, G:0.00, T:0.19


Consensus pattern (9 bp):   
ATCCACAAT
Done.