Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05479

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 761

Length: 1269
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22


Found at i:540 original size:27 final size:27

Alignment explanation


    Indices: 509--566  Score: 89
    Period size: 27  Copynumber: 2.1  Consensus size: 27

        499 GGACAACTAC

                    *                  
        509 AGGAGTTGCACAAAGCAAACAACCTTG
          1 AGGAGTTGAACAAAGCAAACAACCTTG

                           *   *       
        536 AGGAGTTGAACAAAGTAAAGAACCTTG
          1 AGGAGTTGAACAAAGCAAACAACCTTG

                
        563 AGGA
          1 AGGA

        567 AATGTTCCTT


Statistics
Matches: 28,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.43, C:0.16, G:0.26, T:0.16


Consensus pattern (27 bp):   
AGGAGTTGAACAAAGCAAACAACCTTG
Done.