Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03309

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 423

Length: 705
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23


Found at i:138 original size:12 final size:12

Alignment explanation


    Indices: 104--129  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

         94 TTCCCCAAGC

                        
        104 CTCTAACCACCG
          1 CTCTAACCACCG

                        
        116 CTCTAACCACCG
          1 CTCTAACCACCG

              
        128 CT
          1 CT

        130 TTAGCCACCA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.23, C:0.50, G:0.08, T:0.19


Consensus pattern (12 bp):   
CTCTAACCACCG
Done.