Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17027

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1823
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.26


Found at i:57 original size:3 final size:3

Alignment explanation


    Indices: 49--96  Score: 60
    Period size: 3  Copynumber: 16.0  Consensus size: 3

         39 CCCACCAGCT

                                        *           *       *       *      
         49 TCA TCA TCA TCA TCA TCA TCA CCA TCA TCA GCA TCA GCA TCA GCA TCA
          1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA

         97 CCACCACCAC


Statistics
Matches: 37,  Mismatches: 8, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
   3   37  1.00

ACGTcount: A:0.33, C:0.35, G:0.06, T:0.25


Consensus pattern (3 bp):   
TCA

Done.