Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08252

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1668
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23


Found at i:412 original size:6 final size:6

Alignment explanation


    Indices: 390--428  Score: 51
    Period size: 6  Copynumber: 6.5  Consensus size: 6

        380 GTGGCGGTGG

                 *     *                  *              
        390 AGGAGG AGGAAA AGGAGA AGGAGA AGCAGA AGGAGA AGG
          1 AGGAGA AGGAGA AGGAGA AGGAGA AGGAGA AGGAGA AGG

        429 CTGTTGTTTG


Statistics
Matches: 28,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.49, C:0.03, G:0.49, T:0.00


Consensus pattern (6 bp):   
AGGAGA
Done.