Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10144

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 309

Length: 516
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25


Found at i:415 original size:9 final size:9

Alignment explanation


    Indices: 403--439  Score: 65
    Period size: 9  Copynumber: 4.1  Consensus size: 9

        393 AGAGGACGAG

                     
        403 GGTGATGAT
          1 GGTGATGAT

                     
        412 GGTGATGAT
          1 GGTGATGAT

                *    
        421 GGTGGTGAT
          1 GGTGATGAT

                     
        430 GGTGATGAT
          1 GGTGATGAT

             
        439 G
          1 G

        440 ATGCTATTTC


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   9   26  1.00

ACGTcount: A:0.19, C:0.00, G:0.49, T:0.32


Consensus pattern (9 bp):   
GGTGATGAT

Done.