Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_21865

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 575

Length: 959
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24


Found at i:783 original size:6 final size:6

Alignment explanation


    Indices: 772--802  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        762 CCTGCAACTA

                                          *     
        772 CTCCTG CTCCTG CTCCTG CTCCTG CTTCTG C
          1 CTCCTG CTCCTG CTCCTG CTCCTG CTCCTG C

        803 CATTGCTACT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.00, C:0.48, G:0.16, T:0.35


Consensus pattern (6 bp):   
CTCCTG

Done.