Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08909

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 588

Length: 981
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.25


Found at i:691 original size:72 final size:72

Alignment explanation


    Indices: 594--812  Score: 339
    Period size: 72  Copynumber: 3.0  Consensus size: 72

        584 AACCTCTTCC

                                             *  *     *  *  *  *  *          
        594 ACCACCGGTTTATAAGCCTCATCCGGTGCCGGTCTACAAGAAACCACTCCCTCCACCGGTTCCTG
          1 ACCACCGGTTTATAAGCCTCATCCGGTGCCGGTTTATAAGAAGCCGCTTCCACCGCCGGTTCCTG

                   
        659 TCTACAA
         66 TCTACAA

                                *         *                                  
        666 ACCACCGGTTTATAAGCCTCCTCCGGTGCCAGTTTATAAGAAGCCGCTTCCACCGCCGGTTCCTG
          1 ACCACCGGTTTATAAGCCTCATCCGGTGCCGGTTTATAAGAAGCCGCTTCCACCGCCGGTTCCTG

                   
        731 TCTACAA
         66 TCTACAA

                                                                            *
        738 ACCACCGGTTTATAAGCCTCATCCGGTGCCGGTTTATAAGAAGCCGCTTCCACCGCCGGTTCCTA
          1 ACCACCGGTTTATAAGCCTCATCCGGTGCCGGTTTATAAGAAGCCGCTTCCACCGCCGGTTCCTG

             *     
        803 TTTACAA
         66 TCTACAA

               
        810 ACC
          1 ACC

        813 GAAACCCTTC


Statistics
Matches: 134,  Mismatches: 13, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  72  134  1.00

ACGTcount: A:0.22, C:0.35, G:0.18, T:0.24


Consensus pattern (72 bp):   
ACCACCGGTTTATAAGCCTCATCCGGTGCCGGTTTATAAGAAGCCGCTTCCACCGCCGGTTCCTG
TCTACAA
Done.