Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07248

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 743

Length: 1239
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26


Found at i:921 original size:15 final size:16

Alignment explanation


    Indices: 901--930  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

        891 GCCGTTGTTC

                            
        901 GAAGAGAAA-AAGAGA
          1 GAAGAGAAACAAGAGA

                           
        916 GAAGAGAAACAAGAG
          1 GAAGAGAAACAAGAG

        931 CTGAGATTCG


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    9  0.64
  16    5  0.36

ACGTcount: A:0.63, C:0.03, G:0.33, T:0.00


Consensus pattern (16 bp):   
GAAGAGAAACAAGAGA
Done.